First picture of a single molecule.

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Lonestar
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First picture of a single molecule.

Post by Lonestar »

Waddaya think?
The detailed chemical structure of a single molecule has been imaged for the first time, say researchers.

The physical shape of single carbon nanotubes has been outlined before, using similar techniques - but the new method even shows up chemical bonds.

Understanding structure on this scale could help in the design of many things on the molecular scale, particularly electronics or even drugs.

The IBM researchers report their findings in the journal Science.

It is the same group that in July reported the feat of measuring the charge on a single atom.

Fine tuning

In both cases, a team from IBM Research Zurich used what is known as an atomic force microscope or AFM.

Their version of the device acts like a tiny tuning fork, with one of the prongs of the fork passing incredibly close to the sample and the other farther away.

When the fork is set vibrating, the prong nearest the sample will experience a minuscule shift in the frequency of its vibration, simply because it is getting close to the molecule.

Comparing the frequencies of the two prongs gives a measure of just how close the nearer prong is, effectively mapping out the molecule's structure.

The measurement requires extremes of precision. In order to avoid the effects of stray gas molecules bounding around, or the general atomic-scale jiggling that room-temperature objects experience, the whole setup has to be kept under high vacuum and at blisteringly cold temperatures.

However, the tip of the AFM's prong is not well-defined and isn't necessarily sharp on the scale of single atoms. The effect of this bluntness is to blur the instrument's images.

The researchers have now hit on the idea of deliberately picking up just one small molecule - made of one atom of carbon and one of oxygen - with the AFM tip, forming the sharpest, most well-defined tip possible.

Their measurement of a pentacene molecule using this carbon monoxide tip shows the bonds between the carbon atoms in five linked rings, and even suggests the bonds to the hydrogen atoms at the molecule's periphery.

Tip of the iceberg

Lead author of the research Leo Gross told BBC News that the group is aiming to combine their ability to measure individual charges with the new technique, characterising molecules at a truly unprecedented level of detail.

That will help in particular in the field of "molecular electronics", a potential future for electronics in which individual molecules serve as switches and transistors.

Although the approach can trace out the ethereal bonds that connect atoms, it cannot distinguish between atoms of different types.

The team aims to use the new technique in tandem with a similar one known as scanning tunnelling microscopy - in which a tiny voltage is applied accross the sample - to determine if the two methods in combination can deduce the nature of each atom in the AFM images.

That would help the entire field of chemistry, in particular the synthetic chemistry used for drug design.

The results are of wide interest to others who study the nano-world with similar instruments. For them, implementing the same approach is as simple as picking up one of these carbon monoxide molecules with their AFM before taking a measurement.
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Steel
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Re: First picture of a single molecule.

Post by Steel »

These things do produce amazing images.

I think its also possible to use the tip of the probe to move atoms so they've made pictures of atoms arranged in patterns. There was one cool one where they were in a ring and you could see the electron densities in radially symmetric patterns.

Hilarious thing about these incredibly sensitive atomic microscopes is that you can do literally nothing while they're going if you're in the same room. Some of the physicists in my year were using one and they had to sit there for 45 minutes while it did its scan without being able to even speak :lol: For some reason they couldnt leave either, they just had to sit silently and still on the other side of the room. Good results, but not so much fun in the experiment.
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TheLostVikings
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Re: First picture of a single molecule.

Post by TheLostVikings »

Steel wrote: Hilarious thing about these incredibly sensitive atomic microscopes is that you can do literally nothing while they're going if you're in the same room. Some of the physicists in my year were using one and they had to sit there for 45 minutes while it did its scan without being able to even speak :lol: For some reason they couldnt leave either, they just had to sit silently and still on the other side of the room. Good results, but not so much fun in the experiment.
Well I certainly hope the IBM scientists used a different approach, seeing as this image took 20 hours to complete.
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Atlan
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Re: First picture of a single molecule.

Post by Atlan »

TheLostVikings wrote:
Steel wrote: Hilarious thing about these incredibly sensitive atomic microscopes is that you can do literally nothing while they're going if you're in the same room. Some of the physicists in my year were using one and they had to sit there for 45 minutes while it did its scan without being able to even speak :lol: For some reason they couldnt leave either, they just had to sit silently and still on the other side of the room. Good results, but not so much fun in the experiment.
Well I certainly hope the IBM scientists used a different approach, seeing as this image took 20 hours to complete.
I'd sincerely hope that these guys just, you know, did the experiment from another room. That would hardly be unfeasable, and they'd actually be able to take a leak and eat dinner and so forth.

As for the picture itself, SCIENCE, FUCK YEAH!

Working in the chemical field myself, this is just amazing. Ten years ago stuff like this was science fiction.
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dragon
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Re: First picture of a single molecule.

Post by dragon »

That's very cool. So each of the black dots are Carbon Atoms. Wonder how long before we can get a picture of the atom structure, if ever.
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Re: First picture of a single molecule.

Post by Duckie »

dragon wrote:That's very cool. So each of the black dots are Carbon Atoms. Wonder how long before we can get a picture of the atom structure, if ever.
?

The black dots are the spaces between the atoms. There's 5 hex rings of carbons for a total of 22 atoms of carbon, and also 14 hydrogens attached to the edges (the faint radiating lines).
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Re: First picture of a single molecule.

Post by TheLostVikings »

dragon wrote:That's very cool. So each of the black dots are Carbon Atoms. Wonder how long before we can get a picture of the atom structure, if ever.
Actually that's not it, the black dots are nothing. Compare these two images:

Image
Image

You can see the hexagonal carbon rings in the middle, and fainly spot the hydrogen atoms on the sides.
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raptor3x
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Re: First picture of a single molecule.

Post by raptor3x »

Steel wrote: Hilarious thing about these incredibly sensitive atomic microscopes is that you can do literally nothing while they're going if you're in the same room. Some of the physicists in my year were using one and they had to sit there for 45 minutes while it did its scan without being able to even speak :lol: For some reason they couldnt leave either, they just had to sit silently and still on the other side of the room. Good results, but not so much fun in the experiment.
I worked with one of these things when I was doing my physics minor and I can concur that they are a total pain in the ass to work with. The probes are basically sold in bulk because it's incredibly hard not to break them. Setting the probe in the clamp requires a stereo microscope, steady hands, and a ton of patience. Then you have to spend 30-45 minutes recalibrating the thing, only to break the probe again as soon as you try to take measurements.

We had a pretty primitive setup involving a very heavy rubber block, a tripod, and some bungee cords that we used to help isolate the thing from external vibrations, but even then all experiments had to be done in the middle of the night, on nights where the janitors were told to stay away because having somebody walk by the room was enough to mess the readings. Thank goodness the computer was old enough that it was passively cooled or that would have made things even worse. I would have to set everything up and then wait for the vibrations in the isolation stand to completely die down before I could actually start taking readings, and once that was started I basically couldn't move at all until it was finished or I broke yet another tip.
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dragon
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Re: First picture of a single molecule.

Post by dragon »

Duckie wrote:
dragon wrote:That's very cool. So each of the black dots are Carbon Atoms. Wonder how long before we can get a picture of the atom structure, if ever.
?

The black dots are the spaces between the atoms. There's 5 hex rings of carbons for a total of 22 atoms of carbon, and also 14 hydrogens attached to the edges (the faint radiating lines).
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Re: First picture of a single molecule.

Post by PeZook »

You know what's awesome?

When an idiot says something stupid about a scientific theory being "just a theory" or "how can you say what X looks like when you can't see it?" or "How do you know the Sun uses fusion? Have you been there?", this picture can be used to shut him up. The molecule looks exactly like the scientific model predicted, after all.

This may seem a bit silly in light of all the other awesome applications of the technology, but it's still awesome :D
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Re: First picture of a single molecule.

Post by Narkis »

It wouldn't work, I'm afraid. Just like the tons of previously available evidence haven't. It's not that much harder to dismiss a photo as bogus, part of the conspiracy, another trial from Yahweh, erc.

This was reported in the local news, by the way. Many of the reporters made the same mistake of thinking the black dots were molecules too.
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