Genetically engineered bacteria to fight infection

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mr friendly guy
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Genetically engineered bacteria to fight infection

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http://www.abc.net.au/science/articles/ ... te=science
Engineered bacteria armed to fight infection
Wednesday, 17 August 2011 Clare Pain
ABC


The team at the Nanyang Technological University in Singapore has designed harmless E. coli (Escherichia coli) bacteria that are able to detect and kill another bacteria called Pseudomonas aeruginosa which is a serious problem to some hospital patients.

The work, which is published this week in Molecular Systems Biology, is an example of the emerging field of synthetic biology - in which researchers use engineering principles to design novel living systems.

Assistant Professors Chueh Loo Poh and Matthew Wook Chang led the team that designed the new E. coli bacteria. "To our knowledge, this is the first study to use synthetic biology to tackle infectious diseases," they say.

P. aeruginosa is a bacteria which infects the digestive and respiratory tracts and is one of the leading infections acquired in hospitals. It is resistant to many antibiotics and rapidly becomes drug intolerant. For people who have compromised immune systems, such as cancer patients on chemotherapy, it has a 50 per cent mortality rate, say the researchers.

Guided missiles
Chang and Poh set out to design a guided missile in the form of an E. coli bacteria with three added 'devices' to sense, prepare a weapon and then release that weapon in response to the presence of P. aeruginosa .

The weapon used is a substance called pyocin, which is made by some bacteria to kill specific competitors, such as P. aeruginosa, while leaving E. coli unscathed.

The sensing device harnesses a system that P. aeruginosa uses to detect its own population numbers called 'quorum sensing'. Quorum sensing enables each P. aeruginosa to be aware of the presence of other P. aeruginosa microbes.

"Most microbial species have their own quorum-sensing [system]", says Poh. By putting the P. aeruginosa quorum-sensing machinery into the E. coli missile the researchers created a detection device which would notice when there were P. aeruginosa nearby.

Within the E. coli, they enabled the quorum-sensing device to act as a switch, starting pyocin production. The switch then triggers the release of pyocin from the E. coli by 'lysis', or rupture, of the cell.

Poh says that their system is far more specific than standard antibiotics. "When you have an infection and take a drug it kills all the beneficial bacteria too. In this case we are only killing the bad guys."

The researchers have demonstrated that their system works in cultures. Their next step is to test it in mice.

'Neat little system'
Professor Lars Nielsen of the Australian Institute for Bioengineering and Nanotechnology at the University of Queensland says this is "a neat little system" and "very solid science".

He sees the potential more as a preventative "surveillance and attacking" mechanism catching P. aeruginosa in the gut rather than fighting already existing lung infections, as E. coli isn't normally found in the respiratory system.

"You would have to go through lots of regulatory hurdles before it could be used in humans," cautions Nielsen. He also raises concerns that the device genes may spread to other bacteria.

Chang and Poh point out that with the "stalled development of new antibiotics and increasing emergence of multi-drug resistant [bacteria]", this approach may become necessary. They now plan to adapt their system to tackle other pathogens such as cholera.
Interesting. Now for commentary.

Bacteria as the article eluded to have the ability to take genes from other bacteria of different "species". IIRC there are several methods they can do this, via transposons, "eating" up dead bacteria etc. Presumably these E.coli need several genes to activate this "missile system", ie at least one to sense the Pseudomonas and another to produce the toxin.

I am just curious whether its possible for another bacteria to take up the toxin producing gene, and start using it to kill other bacteria indiscriminately. For example if this gene spreads to one of the E.coli which are already antibiotic resistant, for example the ESBL E.coli, it could arguably do more damage than good. If it spread to another bacteria vulnerable to pyocin, then natural selection will stop the bacteria in its tracks.

Otherwise this looks like a potentially case of "science, fuck yeah."
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Re: Genetically engineered bacteria to fight infection

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Trasnformation between different strains of bacteria is possible, but transformation even among the same strain of bacteria happens very rarely. The uptake of foreign DNA from the outside environment is a dicey proposition as you don't know what exactly it is you are getting.
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Re: Genetically engineered bacteria to fight infection

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Interesting...

On another note, the Soviets had developed at one point (thirty or forty years ago, I don't remember exactly) a cheap technique of using virus to kill bacteria. How did they do this ? Well, they went to the river, took some water, put the targeted bacteria into petri dish and from there on selected a particular strain of virus that targeted the particular strain of bacteria they wished to kill. The woman interviewed said about this something to the effect of "Well, there's such diversity in nature that we almost never have to go farther than our backyard to find what we need !".

I had seen a short documentary about this on TV (or was it in a magazine ?) some years ago, and the explanation on why it isn't widely used nowadays but only in some parts of the ex-USSR is that the technique didn't really spread beyond the Iron Curtain at the time, and that for each new strain of bacteria you have to search for a new strain of virus targeting it exclusively (you don't want "collateral damage", after all), and this take some times (~ a week or two) comparatively to modern antibiotics that could be best described as "biological nukes", almost always effective - well, at least when bacterias don't take the bad habit of becoming resistant to them.
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Re: Genetically engineered bacteria to fight infection

Post by Pelranius »

I wonder if this would help or hinder attempts at biowarfare in the long run?

Hopefully the former but the wrong sort of people can be very creative, and often lucky (IIRC, Al Qaeda actually didn't expect the Twin Towers to collapse on 9/11).
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Re: Genetically engineered bacteria to fight infection

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Rabid wrote:Interesting...

On another note, the Soviets had developed at one point (thirty or forty years ago, I don't remember exactly) a cheap technique of using virus to kill bacteria. How did they do this ? Well, they went to the river, took some water, put the targeted bacteria into petri dish and from there on selected a particular strain of virus that targeted the particular strain of bacteria they wished to kill. The woman interviewed said about this something to the effect of "Well, there's such diversity in nature that we almost never have to go farther than our backyard to find what we need !".

I had seen a short documentary about this on TV (or was it in a magazine ?) some years ago, and the explanation on why it isn't widely used nowadays but only in some parts of the ex-USSR is that the technique didn't really spread beyond the Iron Curtain at the time, and that for each new strain of bacteria you have to search for a new strain of virus targeting it exclusively (you don't want "collateral damage", after all), and this take some times (~ a week or two) comparatively to modern antibiotics that could be best described as "biological nukes", almost always effective - well, at least when bacterias don't take the bad habit of becoming resistant to them.
Yes I remember reading a few articles about using bacteriaophages, there shouldn't be a resistance problem as the bacteria and virus would both evolve to counter each other over time. I'm not sure why the idea hasn't caught on, maybe because you couldn't patent the viruses?
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Re: Genetically engineered bacteria to fight infection

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Very likely. You'd have to patent the process, but you can't really, and it would be harder to sell an infrastructure (like "specialized" hospitals) rather than pills. And in any case, any such infrastructure is likely to operate at a loss, as you'd have to constantly pay people to "train" new virus strains to "fight" the new bacteria strains - unless you make people pay a fortune for such treatments, of course, but this would further hinder the spread of such techniques and further reinforce the "hegemony" of antibiotics.

Still, it is likely that as bacterias will become more and more antibiotic-resistant, "biologic" methods like these will gain in popularity, if medicine papers spread the word of their existence and popularize them ; and if their cost are being kept reasonnable.


I think it will be ultimately decided by how fast the new antibiotics that will be developed will be able to keep up with the rate at which bacteria strains will become resistant to them - some sort of Arm Race.
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Re: Genetically engineered bacteria to fight infection

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One of the ways we can slow the development of resistant of bacteria to antibiotics, is simply used less of them and when necessary. I am less looking at hospitals in developed nations, but more so at antibiotics for life stock, and also how antibiotics are routinely dispatched in developing nations, where they can be bought over the counter without a doctor's prescription.

I think these genetically engineered microbes against bacteria will eventually end up as just another weapon in our arsenal, and given potential costs may end up being used only in the sickest patients, ie immunocompromised ones.
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Re: Genetically engineered bacteria to fight infection

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I don't see anything that suggests the E.Coli did this by itself. The researchers stuck the genes in as usually happens with genetic engineering.

Granted, lab strains of E.Coli are proverbial town bicycles compared to most other bacteria, after years in the lab human researchers have basically selected for an organism that is a great deal easier to geneticallty manipulate than the wild type.

There's also a difference between Chromosomal DNA and plasmid DNA. Bacteria play it more fast and loose with plasmids. They'll sometimes just suck one up and give it a go, assuming it meets certain criteria. Horozontal transfer is a heck of a lot more frequent with plasmids than other random bits of DNA. But, getting plasmids to integrate into the genomic DNA is hit and miss and Bacterial populations will sometimes spit plasmids back out again, or fail to use them at all. They're much more pickey with their Chromosomal DNA, and don't trade it. They're annoying little bastards at times.
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Re: Genetically engineered bacteria to fight infection

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Bedlam wrote:
Rabid wrote:Interesting...

On another note, the Soviets had developed at one point (thirty or forty years ago, I don't remember exactly) a cheap technique of using virus to kill bacteria. How did they do this ? Well, they went to the river, took some water, put the targeted bacteria into petri dish and from there on selected a particular strain of virus that targeted the particular strain of bacteria they wished to kill. The woman interviewed said about this something to the effect of "Well, there's such diversity in nature that we almost never have to go farther than our backyard to find what we need !".

I had seen a short documentary about this on TV (or was it in a magazine ?) some years ago, and the explanation on why it isn't widely used nowadays but only in some parts of the ex-USSR is that the technique didn't really spread beyond the Iron Curtain at the time, and that for each new strain of bacteria you have to search for a new strain of virus targeting it exclusively (you don't want "collateral damage", after all), and this take some times (~ a week or two) comparatively to modern antibiotics that could be best described as "biological nukes", almost always effective - well, at least when bacterias don't take the bad habit of becoming resistant to them.
Yes I remember reading a few articles about using bacteriaophages, there shouldn't be a resistance problem as the bacteria and virus would both evolve to counter each other over time. I'm not sure why the idea hasn't caught on, maybe because you couldn't patent the viruses?
No doubt that's a problem. However, it also was almost entirely a Soviet project, and I recall reading about how pretty much the entire field crashed and burned when the USSR did. You can't do bacteriophage research when the funding is gone and you've been forced to take a job driving cabs to put food on the table.
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Re: Genetically engineered bacteria to fight infection

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Lord of the Abyss wrote:
Bedlam wrote:
Rabid wrote:Interesting...

On another note, the Soviets had developed at one point (thirty or forty years ago, I don't remember exactly) a cheap technique of using virus to kill bacteria. How did they do this ? Well, they went to the river, took some water, put the targeted bacteria into petri dish and from there on selected a particular strain of virus that targeted the particular strain of bacteria they wished to kill. The woman interviewed said about this something to the effect of "Well, there's such diversity in nature that we almost never have to go farther than our backyard to find what we need !".

I had seen a short documentary about this on TV (or was it in a magazine ?) some years ago, and the explanation on why it isn't widely used nowadays but only in some parts of the ex-USSR is that the technique didn't really spread beyond the Iron Curtain at the time, and that for each new strain of bacteria you have to search for a new strain of virus targeting it exclusively (you don't want "collateral damage", after all), and this take some times (~ a week or two) comparatively to modern antibiotics that could be best described as "biological nukes", almost always effective - well, at least when bacterias don't take the bad habit of becoming resistant to them.
Yes I remember reading a few articles about using bacteriaophages, there shouldn't be a resistance problem as the bacteria and virus would both evolve to counter each other over time. I'm not sure why the idea hasn't caught on, maybe because you couldn't patent the viruses?
No doubt that's a problem. However, it also was almost entirely a Soviet project, and I recall reading about how pretty much the entire field crashed and burned when the USSR did. You can't do bacteriophage research when the funding is gone and you've been forced to take a job driving cabs to put food on the table.
I think the point is that it was so simple. If we get another Tokyo-subway-gas gang again, they could well do that.
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Re: Genetically engineered bacteria to fight infection

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Engineering newer and better ways for bacteria, viruses, etc. to kill each other is stupidly foolish. Micro organisms like bacteria are known to be total sluts that will incorporate any bit of random DNA or RNA that happens along never mind the direct mechanisms for DNA exchange (e.g., http://www.ncbi.nlm.nih.gov/pubmed/21129380). Combine this superb ability to rapidly acquire new traits with the fact that it's impossible to prove there won't be massive unintended consequences from introducing 'killer E. coli' into the environment and it's clear this path of research should remain in the lab for a very long time until it's been studied to death. It's even worse when you consider the fact that the people in charge of policy are almost always greedy selfish idiots who do things like feed all our best antibiotics to farm animals (often in horribly crowded and unsanitary conditions) until they've created super bugs that can't be treated.
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Re: Genetically engineered bacteria to fight infection

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Rabid wrote:Interesting...

On another note, the Soviets had developed at one point (thirty or forty years ago, I don't remember exactly) a cheap technique of using virus to kill bacteria. How did they do this ? Well, they went to the river, took some water, put the targeted bacteria into petri dish and from there on selected a particular strain of virus that targeted the particular strain of bacteria they wished to kill. The woman interviewed said about this something to the effect of "Well, there's such diversity in nature that we almost never have to go farther than our backyard to find what we need !".

I had seen a short documentary about this on TV (or was it in a magazine ?) some years ago, and the explanation on why it isn't widely used nowadays but only in some parts of the ex-USSR is that the technique didn't really spread beyond the Iron Curtain at the time, and that for each new strain of bacteria you have to search for a new strain of virus targeting it exclusively (you don't want "collateral damage", after all), and this take some times (~ a week or two) comparatively to modern antibiotics that could be best described as "biological nukes", almost always effective - well, at least when bacterias don't take the bad habit of becoming resistant to them.
I read an article in Discover that had a similar trial in the US - the treatment worked, but the virus also attacked and destroyed mitochondria, which was even more of a death sentence than the disease was.

The 'collateral damage' from this sort of treatment can be rather significant.
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Re: Genetically engineered bacteria to fight infection

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Rabid wrote:Very likely. You'd have to patent the process, but you can't really...
Why not?
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Re: Genetically engineered bacteria to fight infection

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sciguy wrote:
Rabid wrote:Very likely. You'd have to patent the process, but you can't really...
Why not?
I agree. The US Patent Office lets people patent everything from genetically modified vegetables to something as immaterial as a business model (*cough* Netflix *cough cough*). About the only thing they won't let you patent is a perpetual motion machine, and that's just to keep their desks clean.
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Re: Genetically engineered bacteria to fight infection

Post by Coop D'etat »

The concerns of equipting E. Coli with some kind of targeted weapon that will run rampant is overblown. The pyocin toxin they are being equipt with is specific to the strain of bacteria they are targeting. This isn't for general use anti-bacterial weapon that would suddenly change the microbial balance of power. Also, these genes they are introducing are already present in the bacterial ecosystem so nothing new is being introduced there. The clever bit is using the quorom sensing trick to detect the bacterial strain you are looking to combat, but that's nothing new either. Bacteria have been using other bacteria's signaling to kill them for eons and the process is strain specific and also does not easily mutate for general use against other strains which have their own specific signalling languages.
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Re: Genetically engineered bacteria to fight infection

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StarSword wrote: I agree. The US Patent Office lets people patent everything from genetically modified vegetables to something as immaterial as a business model (*cough* Netflix *cough cough*).
Yeah, there are already like eleventy jillion patents on using viruses to treat various diseases, included cancer.
About the only thing they won't let you patent is a perpetual motion machine, and that's just to keep their desks clean.
It's not working in my case...
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Re: Genetically engineered bacteria to fight infection

Post by whackadoodle »

A good SF book that has this as it's central premise is Greg Bear's Vitals
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